try this
$ awk '{printf("load %s\nload %s\n",$2,$3);for(i=4;i<=NF;i++){printf("goto %s\ncollapse\nsnapshot %s_%s.png\n",$i,$1,$i)}}' test.t
load UICEX_0001_T1.bam
load UICEX_0001_C2.bam
goto chr1:16946335
collapse
snapshot UICEX_0001_chr1:16946335.png
goto chr19:9064309
collapse
snapshot UICEX_0001_chr19:9064309.png
goto chr8:10480278
collapse
snapshot UICEX_0001_chr8:10480278.png
load UICEX_0003_T1.bam
load UICEX_0003_C2.bam
goto chr1:16974893
collapse
snapshot UICEX_0003_chr1:16974893.png
Braiam
27.01.2016, 19:00
Ссылка